FullParticleCell.h

/*
 * FullParticleCell.h
 *
 *  Created on: 6 Feb 2017
 *      Author: tchipevn
 */
 
#ifndef SRC_PARTICLECONTAINER_FULLPARTICLECELL_H_
#define SRC_PARTICLECONTAINER_FULLPARTICLECELL_H_
 
#include <vector>
 
#include "Cell.h"
#include "particleContainer/ParticleCellBase.h"
#include "particleContainer/adapter/CellDataSoA.h"
#include "SingleCellIterator.h"
 
 
class FullParticleCell: public ParticleCellBase {
    /*private:
     FullParticleCell(const ParticleCell& that);*/
public:
    FullParticleCell();
    ~FullParticleCell();
 
    SingleCellIterator<FullParticleCell> iterator() {
        return SingleCellIterator<FullParticleCell>(this);
    }
 
    void deallocateAllParticles() override;
 
    bool addParticle(Molecule& particle, bool checkWhetherDuplicate = false) override;
 
    bool isEmpty() const override;
 
    bool deleteMoleculeByIndex(size_t index) override;
 
    int getMoleculeCount() const override;
 
    CellDataSoA& getCellDataSoA() {
        return _cellDataSoA;
    }
 
    void preUpdateLeavingMolecules() override;
 
    void updateLeavingMoleculesBase(ParticleCellBase& otherCell) override;
 
    void postUpdateLeavingMolecules() override;
 
    void getRegion(double lowCorner[3], double highCorner[3],
            std::vector<Molecule*> &particlePtrs, bool removeFromContainer = false) override;
 
    void buildSoACaches() override;
 
    void increaseMoleculeStorage(size_t numExtraMols) override;
 
    virtual size_t getMoleculeVectorDynamicSize() const override {
        return _molecules.capacity() * sizeof(Molecule) + _leavingMolecules.capacity() * sizeof(Molecule);
    }
 
//protected: do not use!
    void moleculesAtNew(size_t i, Molecule *& multipurposePointer) override {
        multipurposePointer = & _molecules.at(i);
    }
 
    void moleculesAtConstNew(size_t i, Molecule *& multipurposePointer) const override {
        multipurposePointer = const_cast<Molecule*>(& _molecules.at(i));
    }
 
    bool findMoleculeByID(size_t& index, unsigned long molid) const override;
 
private:
 
    void updateLeavingMolecules(FullParticleCell& otherCell);
 
    std::vector<Molecule> _molecules;
 
    std::vector<Molecule> _leavingMolecules;
 
    CellDataSoA _cellDataSoA;
};
 
#endif /* SRC_PARTICLECONTAINER_FULLPARTICLECELL_H_ */