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ls1-MarDyn
ls1-MarDyn molecular dynamics code
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This is the complete list of members for LinkedCells, including all inherited members.
| _boundingBoxMax | ParticleContainer | protected |
| _boundingBoxMin | ParticleContainer | protected |
| addHaloParticle(Molecule &particle, bool inBoxCheckedAlready=false, bool checkWhetherDuplicate=false, const bool &rebuildCaches=false) | ParticleContainer | virtual |
| addParticle(Molecule &particle, bool inBoxCheckedAlready=false, bool checkWhetherDuplicate=false, const bool &rebuildCaches=false) override | LinkedCells | virtual |
| addParticles(std::vector< Molecule > &particles, bool checkWhetherDuplicate=false) override | LinkedCells | virtual |
| clear() override | LinkedCells | virtual |
| deleteMolecule(ParticleIterator &moleculeIter, const bool &rebuildCaches) override (defined in LinkedCells) | LinkedCells | virtual |
| deleteOuterParticles() override | LinkedCells | virtual |
| get_halo_L(int index) const override | LinkedCells | virtual |
| getBoundingBoxMax(int dimension) const | ParticleContainer | virtual |
| getBoundingBoxMin(int dimension) const | ParticleContainer | virtual |
| getBoxWidthInNumCells() (defined in LinkedCells) | LinkedCells | inline |
| getCellIndexOfMolecule(Molecule *molecule) const | LinkedCells | |
| getCellIndexOfPoint(const double point[3]) const | LinkedCells | |
| getCellLength() override (defined in LinkedCells) | LinkedCells | inlinevirtual |
| getCellReference(int idx) (defined in LinkedCells) | LinkedCells | inline |
| getConfigurationAsString() override | LinkedCells | virtual |
| getCutoff() const override (defined in LinkedCells) | LinkedCells | inlinevirtual |
| getEnergy(ParticlePairsHandler *particlePairsHandler, Molecule *m1, CellProcessor &cellProcessor) override (defined in LinkedCells) | LinkedCells | virtual |
| getHaloSize() | ParticleContainer | inlinevirtual |
| getHaloWidthNumCells() override (defined in LinkedCells) | LinkedCells | inlinevirtual |
| getInvalidParticles() (defined in ParticleContainer) | ParticleContainer | inlinevirtual |
| getMoleculeAtPosition(const double pos[3]) override | LinkedCells | virtual |
| getName() override (defined in LinkedCells) | LinkedCells | virtual |
| getNumberOfParticles() override | LinkedCells | virtual |
| getParticleCellStatistics() override | LinkedCells | virtual |
| getSkin() const (defined in ParticleContainer) | ParticleContainer | inlinevirtual |
| getTotalSize() override (defined in LinkedCells) | LinkedCells | virtual |
| initCubicGrid(std::array< unsigned long, 3 > numMoleculesPerDimension, std::array< double, 3 > simBoxLength, size_t seed_offset) override (defined in LinkedCells) | LinkedCells | virtual |
| isInBoundingBox(double r[3]) const | ParticleContainer | virtual |
| isInvalidParticleReturner() (defined in ParticleContainer) | ParticleContainer | inlinevirtual |
| iterator(ParticleIterator::Type t) override (defined in LinkedCells) | LinkedCells | inlinevirtual |
| LinkedCells(double bBoxMin[3], double bBoxMax[3], double cutoffRadius) | LinkedCells | |
| LinkedCells() | LinkedCells | |
| LinkedCellsTest (defined in LinkedCells) | LinkedCells | friend |
| ParticleContainer(double bBoxMin[3], double bBoxMax[3]) | ParticleContainer | |
| ParticleContainer() | ParticleContainer | inline |
| printSubInfo(int offset) override (defined in LinkedCells) | LinkedCells | virtual |
| readXML(XMLfileUnits &xmlconfig) override | LinkedCells | virtual |
| rebuild(double bBoxMin[3], double bBoxMax[3]) override | LinkedCells | virtual |
| regionIterator(const double startRegion[3], const double endRegion[3], ParticleIterator::Type type) override (defined in LinkedCells) | LinkedCells | virtual |
| requiresForceExchange() const override (defined in LinkedCells) | LinkedCells | virtual |
| setCutoff(double rc) override | LinkedCells | inlinevirtual |
| traverseCells(CellProcessor &cellProcessor) override | LinkedCells | virtual |
| traverseNonInnermostCells(CellProcessor &cellProcessor) override (defined in LinkedCells) | LinkedCells | virtual |
| traversePartialInnermostCells(CellProcessor &cellProcessor, unsigned int stage, int stageCount) override (defined in LinkedCells) | LinkedCells | virtual |
| update() override | LinkedCells | virtual |
| update_via_coloring() (defined in LinkedCells) | LinkedCells | |
| update_via_copies() (defined in LinkedCells) | LinkedCells | |
| update_via_sliced_traversal() (defined in LinkedCells) | LinkedCells | |
| update_via_traversal() (defined in LinkedCells) | LinkedCells | |
| updateBoundaryAndHaloMoleculeCaches() override | LinkedCells | virtual |
| updateInnerMoleculeCaches() override | LinkedCells | virtual |
| updateMoleculeCaches() override | LinkedCells | virtual |
| VTKGridWriter (defined in LinkedCells) | LinkedCells | friend |
| ~LinkedCells() | LinkedCells | |
| ~MemoryProfilable() (defined in MemoryProfilable) | MemoryProfilable | inlinevirtual |
| ~ParticleContainer() | ParticleContainer | inlinevirtual |
1.9.2