Michael Bader - Publications/Veröffentlichungen

Book:

• M. Bader: Space-Filling Curves - An Introduction with Applications in Scientific Computing [] [BibTeX], Volume 9 of Texts in Computational Science and Engineering. Springer-Verlag, 2013.

Book Contributions:

• A. Heinecke, A. Breuer and M. Bader: High Performance Seismic Simulations [BibTeX].
  In J. Jeffers, J. Reinders and A. Sodani (ed.), Intel Xeon Phi Processor High Performance Programming - Knights Landing Edition, p. Chapter 21. Morgan Kaufmann, May 2016.
• M. Bader and T. Weinzierl: Cache-Oblivious Spacetree Traversals [BibTeX].
  In M.-Y. Kao (ed.), Encyclopedia of Algorithms. Springer, Berlin Heidelberg, June 2015.
• M. Bader, H.-J. Bungartz and M. Mehl: Space-Filling Curves [BibTeX].
  In D. Padua (ed.), Encyclopedia of Parallel Computing, Volume 19, p. 1862–1867. Springer, Berlin/Heidelberg/New York, 2011. DOI: 10.1007/978-0-387-09766-4_145.

Publications in Journals and Proceedings:

• M. Tavelli, M. Dumbser, D. E. Charrier, L. Rannabauer and M. Bader: A simple diffuse interface approach on adaptive Cartesian grids for the linear elastic wave equations with complex topography [pdf] [BibTeX].
  In arXiv.org, No. arXiv:1804.09491, April 2018.
• L. Rannabauer, M. Dumbser and M. Bader: ADER-DG with a-posteriori Finite-Volume limiting to simulate tsunamis in a parallel adaptive mesh refinement framework [BibTeX].
  In Computers & Fluids. Elsevier, February 2018.
• C. Uphoff, S. Rettenberger, M. Bader, E. H. Madden, T. Ulrich, S. Wollherr and A.-A. Gabriel: Extreme Scale Multi-Physics Simulations of the Tsunamigenic 2004 Sumatra Megathrust Earthquake [pdf] [BibTeX].
  In SC '17: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, November 2017. SC17 Best Paper.
• C. R. Ferreira and M. Bader: Load Balancing and Patch-Based Parallel Adaptive Mesh Refinement for Tsunami Simulation on Heterogeneous Platforms Using Xeon Phi Coprocessors [pdf] [BibTeX].
  In PASC'17 - Proceedings of the Platform for Advanced Scientific Computing Conference, p. 12:1–12:12. ACM, June 2017.
• A. Mo-Hellenbrand, I. A. Compres, O. Meister, H.-J. Bungartz, M. Gerndt and M. Bader: A Large-Scale Malleable Tsunami Simulation Realized on an Elastic MPI Infrastructure [BibTeX].
  In Proceedings of the Computing Frontiers Conference, CF'17. ACM, May 2017.
• A. Pöppl, M. Bader, T. Schwarzer and M. Glaß: SWE-X10: Simulating shallow water waves with lazy activation of patches using ActorX10 [pdf] [BibTeX].
  In Proceedings of the Second International Workshop on Extreme Scale Programming Models and Middleware, p. 32–39. IEEE, November 2016. Workshop held at SC16.
• S. Wildermann, M. Bader, L. Bauer, M. Damschen, D. Gabriel, M. Gerndt, M. Glaß, J. Henkel, J. Paul, A. Pöppl, S. Roloff, T. Schwarzer, G. Snelting, W. Stechele, J. Teich, A. Weichselgartner and A. Zwinkau: Invasive computing for timing-predictable stream processing on MPSoCs [BibTeX].
  In it - Information Technology, Volume 58(6), p. 267–280. DeGruyter, Oldenburg, September 2016.
• S. Rettenberger, O. Meister, M. Bader and A.-A. Gabriel: ASAGI - A Parallel Server for Adaptive Geoinformation [pdf] [BibTeX].
  In EASC '16 Proceedings of the Exascale Applications and Software Conference 2016, p. 2:1–2:9. ACM, September 2016.
• O. Meister, K. Rahnema and M. Bader: Parallel, Memory Efficient Adaptive Mesh Refinement on Structured Triangular Meshes with Billions of Grid Cells [pdf] [BibTeX].
  In ACM Transactions on Mathematical Software, Volume 43(3), p. 19:1–19:27. ACM, New York, NY, USA, September 2016.
• C. Uphoff and M. Bader: Generating high performance matrix kernels for earthquake simulations with viscoelastic attenuation [BibTeX].
  In W. W. Smari (ed.), Proceedings of the 2016 International Conference on High Performance Computing & Simulation (HPCS 2016), p. 908–916. IEEE, July 2016.
• A. Heinecke, A. Breuer, M. Bader and P. Dubey: High Order Seismic Simulations on the Intel Xeon Phi Processor (Knights Landing) [pdf] [BibTeX].
  In M. J. Kunkel, P. Balaji and J. Dongarra (ed.), High Performance Computing: 31st International Conference, ISC High Performance 2016, Volume 9697 of Lecture Notes in Computer Science, p. 343–362, June 2016.
• S. Roloff, A. Pöppl, T. Schwarzer, S. Wildermann, M. Bader, M. Glaß and J. Teich: ActorX10: An Actor Library for X10 [pdf] [BibTeX].
  In Proceedings of the Sixth ACM SIGPLAN X10 Workshop (X10), p. 24–29. Association for Computing Machinery (ACM), Santa Barbara, CA, USA, June 2016.
• A. Breuer, A. Heinecke and M. Bader: Petascale Local Time Stepping for the ADER-DG Finite Element Method [BibTeX].
  In 2016 IEEE International Parallel & Distributed Processing Symposium, p. 854–863, June 2016.
• A. Pöppl and M. Bader: SWE-X10: An Actor-based and Locally Coordinated Solver for the Shallow Water Equations [pdf] [BibTeX].
  In Proceedings of the Sixth ACM SIGPLAN X10 Workshop (X10), p. 30–31. Association for Computing Machinery (ACM), Santa Barbara, CA, USA, June 2016.
• A. Ragagnin, N. Tchipev, M. Bader, K. Dolag and N. Hammer: Exploiting the Space Filling Curve Ordering of Particles in the Neighbour Search of Gadget3 [BibTeX].
  In G. R. Joubert, H. Leather, M. Parsons, F. Peters and M. Sawyer (ed.), Parallel Computing: On the Road to Exascale, Volume 27 of Advances in Parallel Computing, p. 411–420. IOS Press, May 2016.
• S. Rettenberger and M. Bader: Optimizing Large Scale I/O for Petascale Seismic Simulations on Unstructured Meshes [BibTeX].
  In 2015 IEEE International Conference on Cluster Computing (CLUSTER), p. 314–317. IEEE Xplore, Chicago, IL, September 2015.
• A. Breuer, A. Heinecke, L. Rannabauer and M. Bader: High-Order ADER-DG Minimizes Energy- and Time-to-Solution of SeisSol [BibTeX].
  In High Performance Computing, 30th International Conference, ISC High Performance 2015, Frankfurt, Germany, July 12-16, 2015, Proceedings, Volume 9137 of Lecture Notes in Computer Science, p. 340–357. Springer, July 2015.
• O. Meister and M. Bader: 2D adaptivity for 3D problems: Parallel SPE10 reservoir simulation on dynamically adaptive prism grids [BibTeX].
  In Journal of Computational Science, Volume 9, p. 101–106. Elsevier, May 2015. Special Issue ICCS 2015.
• R. Brook, A. Heinecke, A. Costa, P. Peltz Jr., V. Betro, T. Baer, M. Bader and P. Dubey: Beacon: Deployment and Application of Intel Xeon Phi Coprocessors for Scientific Computing [BibTeX].
  In Computing in Science and Engineering, Volume 17(2), p. 65–72. IEEE, March 2015. Issue on High Performance Computing.
• A. Heinecke, A. Breuer, S. Rettenberger, M. Bader, A.-A. Gabriel, C. Pelties, A. Bode, W. Barth, X.-K. Liao, K. Vaidyanathan, M. Smelyanskiy and P. Dubey: Petascale High Order Dynamic Rupture Earthquake Simulations on Heterogeneous Supercomputers [BibTeX].
  In SC '14: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, p. 3–14. IEEE, New Orleans, LA, USA, November 2014. Gordon Bell Finalist.
• T. Weinzierl, M. Bader, K. Unterweger and R. Wittmann: Block Fusion on Dynamically Adaptive Spacetree Grids for Shallow Water Waves [BibTeX].
  In Parallel Processing Letters, Volume 24(3), p. 1441006, September 2014.
• M. Bader, A. Breuer, W. Hölzl and S. Rettenberger: Vectorization of an Augmented Riemann Solver for the Shallow Water Equations [BibTeX].
  In W. W. Smari and V. Zeljkovic (ed.), Proceedings of the 2014 International Conference on High Performance Computing and Simulation (HPCS 2014), p. 193–201. IEEE, August 2014.
• A. Breuer, A. Heinecke, S. Rettenberger, M. Bader, A.-A. Gabriel and C. Pelties: Sustained Petascale Performance of Seismic Simulations with SeisSol on SuperMUC [pdf] [BibTeX].
  In J.M. Kunkel, T. T. Ludwig and H.W. Meuer (ed.), Supercomputing - 29th International Conference, ISC 2014, Volume 8488 of Lecture Notes in Computer Science, p. 1–18. Springer, Heidelberg, June 2014. PRACE ISC Award 2014.
• A. Breuer, A. Heinecke, M. Bader and C. Pelties: Accelerating SeisSol by Generating Vectorized Code for Sparse Matrix Operators [pdf] [BibTeX].
  In Parallel Computing - Accelerating Computational Science and Engineering (CSE), Volume 25 of Advances in Parallel Computing, p. 347–356. IOS Press, April 2014.
• T. Weinzierl, R. Wittmann, K. Unterweger, M. Bader, A. Breuer and S. Rettenberger: Hardware-aware block size tailoring on adaptive spacetree grids for shallow water waves [BibTeX].
  In HiStencils 2014 - 1st International Workshop on High-Performance Stencil Computations, 2014.
• A. Heinecke, A. Breuer, S. Rettenberger, M. Bader, A. Gabriel and C. Pelties: Optimized Kernels for large scale earthquake simulations with SeisSol, an unstructured ADER-DG code [BibTeX].
  In Supercomputing 2013, The International Conference for High Performance Computing, Networking, Storage and Analysis.. IEEE, Denver, November 2013. Poster abstract, accepted for publication.
• M. Schreiber, H.-J. Bungartz and M. Bader: Shared Memory Parallelization of Fully-Adaptive Simulations Using a Dynamic Tree-Split and -Join Approach [pdf] [BibTeX]. IEEE Xplore, Puna, India, December 2012.
• M. Bader and A. Breuer: Teaching Parallel Programming Models on a Shallow-Water Code [BibTeX].
  In ISPDC 2012 - 11th International Symposium on Parallel and Distributed Computing, p. 301–308. IEEE Computer Society, November 2012.
• M. Bader, H.-J. Bungartz and M. Schreiber: Invasive Computing on High Performance Shared Memory Systems [BibTeX].
  In Facing the Multicore-Challenge III, Volume 7686 of Lecture Notes in Computer Science, p. 1–12, September 2012.
• M. Bader, A. Breuer and M. Schreiber: Parallel Fully Adaptive Tsunami Simulations [BibTeX].
  In Facing the Multicore-Challenge III, Volume 7686 of Lecture Notes in Computer Science, p. 137–138. Springer, Heidelberg, Germany, September 2012. Poster abstract.
• O. Meister, K. Rahnema and M. Bader: A Software Concept for Cache-Efficient Simulation on Dynamically Adaptive Structured Triangular Grids [BibTeX].
  In K. De Boschhere, E. H. D'Hollander, G. R. Joubert, D. Padua and F. Peters (ed.), Applications, Tools and Techniques on the Road to Exascale Computing, Volume 22 of Advances in Parallel Computing, p. 251–260. IOS Press, Gent, May 2012.
• M. Bader, K. Rahnema and C. A. Vigh: Memory-Efficient Sierpinski-Order Traversals on Dynamically Adaptive, Recursively Structured Triangular Grids [BibTeX].
  In K. Jonasson (ed.), Applied Parallel and Scientific Computing - 10th International Conference, PARA 2010, Volume 7134 of Lecture Notes in Computer Science, p. 302–311. Springer, March 2012.
• M. Bader, H.-J. Bungartz, M. Gerndt, A. Hollmann and J. Weidendorfer: Invasive Programming as a Concept for HPC [BibTeX].
  In Proceedings of the 10h IASTED International Conference on Parallel and Distributed Computing and Networks 2011 (PDCN 2011), February 2011.
• T. Auckenthaler, M. Bader, T. Huckle, K. Waldherr and A. Spörl: Matrix exponentials and parallel prefix computation in a quantum control problem [BibTeX].
  In Parallel Computing, Volume 36(5-6), p. 359–369, June 2010. Special issue (PMAA08).
• M. Bader, C. Böck, J. Schwaiger and C. A. Vigh: Dynamically Adaptive Simulations with Minimal Memory Requirement - Solving the Shallow Water Equations Using Sierpinski Curves [BibTeX].
  In SIAM Journal of Scientific Computing, Volume 32(1), p. 212–228, February 2010.
• M. Bader and A. Heinecke: Cache Oblivious Dense and Sparse Matrix Multiplication Based on Peano Curves [pdf] [BibTeX].
  In Proceedings of the PARA 08, 9th International Workshop on State-of-the-Art in Scientific and Parallel Computing of Lecture Notes in Computer Science. Springer, December 2009. accepted for publication.
• J. Behrens and M. Bader: Efficiency considerations in triangular adaptive mesh refinement [BibTeX].
  In Philosophical Transactions of the Royal Society A, Volume 367, p. 4577–4589, October 2009. Theme Issue 'Mesh generation and mesh adaptation for large-scale Earth-system modelling'.
• M. Bader, H.-J. Bungartz, I. L. Muntean and T. Neckel: Software Engineering meets Scientific Computing - Group Projects in CSE Education [BibTeX].
  In International Journal of Computational Science and Engineering, Volume 4(4), p. 245–253, October 2009. Special Issue on Software Issues in Computational Science and Engineering.
• M. Bader and J. Weidendorfer: Exploiting memory hierarchies in scientific computing [] [BibTeX].
  In International Conference on High Performance Computing & Simulation, 2009. HPCS '09 of IEEE Explore Digital Library, p. 33–35, June 2009. Digital Object Identifier 10.1109/HPCSIM.2009.5192891.
• A. Heinecke and M. Bader: Towards many-core implementation of LU decomposition using Peano Curves [BibTeX].
  In Conference On Computing Frontiers, UCHPC-MAW '09: Proceedings of the combined workshops on UnConventional high performance computing workshop plus memory access workshop, p. 21–30. ACM, New York, May 2009.
• M. Bader, S. Schraufstetter, C. A. Vigh and J. Behrens: Memory Efficient Adaptive Mesh Generation and Implementation of Multigrid Algorithms Using Sierpinski Curves [BibTeX].
  Volume 4(1), p. 12–21. International Journal of Computational Science and Engineering, November 2008.
• M. Bader, H.-J. Bungartz and U. Rüde: Preface - Special Issue on Implementation Aspects in Scientific Computing [] [BibTeX].
  In M. Bader, H.-J. Bungartz and U. Rüde (ed.), International Journal of Computational Science and Engineering, Volume 4(1), November 2008.
• M. Bader: Exploiting the Locality Properties of Peano Curves for Parallel Matrix Multiplication [BibTeX].
  In E. Luque, T. Margalef and D. Benitez (ed.), Euro-Par 2008 -- Parallel Processing, Volume 5168 of Lecture Notes in Computer Science, p. 801–810. Springer, August 2008.
• M. Bader, R. Franz, S. Guenther and A. Heinecke: Hardware-oriented Implementation of Cache Oblivious Matrix Operations Based on Space-filling Curves [BibTeX].
  In R. Wyrzykowski, J. Dongarra, K. Karczewski and J. Wasniewski (ed.), Parallel Processing and Applied Mathematics, 7th International Conference, PPAM 2007, Volume 4967 of Lecture Notes in Computer Science, p. 628–638. Springer, May 2008.
• A. Heinecke and M. Bader: Parallel matrix multiplication based on space-filling curves on shared memory multicore platforms [BibTeX].
  In Proceedings of the 2008 Computing Frontiers Conference and co-located workshops: MAW'08 and WRFT'08, p. 385–392, May 2008.
• M. Bader, S. Hanigk and T. Huckle: Parallelisation of Block Recursive Matrix Multiplication in Prefix Computations [BibTeX].
  In C. Bischof, M. Bücker, P. Gibbon, G. Joubert, T. Lippert, B. Mohr and F. Peters (ed.), Parallel Computing: Architectures, Algorithms and Applications, Proceedings of the ParCo, Parallel Computing 2007, Volume 38 of NIC Series, p. 175––184, January 2008. also published in Advances in Parallel Computing 15, ISBN 978-1-58603-796-3.
• C. Zenger, M. Bader and M. Mehl: Cache oblivious Memory Management for PDE-solvers [BibTeX].
  In R. E. Banks (ed.), Schnelle Löser für partielle Differentialgleichungen, Volume 23 of Oberwolfach Reports, p. 57, 2008.
• M. Bader and C. Mayer: Cache Oblivious Matrix Operations Using Peano Curves [BibTeX].
  In B. Kagstrom, E. Elmroth, J. Dongarra and J. Wasniewski (ed.), Applied Parallel Computing, State of the Art in Scientific Computing, Volume 4699 of Lecture Notes in Computer Science, p. 521–530, October 2007.
• M. Bader, S. Schraufstetter and J. Behrens: Memory Efficient Adaptive Mesh Generation and Implementation of Multigrid Algorithms Using Sierpinski Curves [BibTeX].
  In M. Becker and H. Szczerbicka (ed.), Simulationstechnique -- 19th Symposium in Hannover 2006 of Frontiers in Simulation, p. 259––264. SCS Publishing House, Erlangen, September 2006.
• M. Bader and C. Zenger: Cache oblivious matrix multiplication using an element ordering based on a Peano curve [BibTeX].
  In Linear Algebra and Its Applications, Volume 417(2--3), p. 301––313. Elsevier, September 2006.
• M. Bader and C. Zenger: Efficient Storage and Processing of Adaptive Triangular Grids Using Sierpinski Curves [BibTeX].
  In Computational Science -- ICCS 2006, Volume 3991 of Lecture Notes in Computer Science. Springer, May 2006.
• M. Bader and C. Zenger: A Cache Oblivious Algorithm for Matrix Multiplication Based on Peano’s Space Filling Curve [BibTeX].
  In Parallel Processing and Applied Mathematics, 6th International Conference, PPAM 2005, Volume 3911 of Lecture Notes in Computer Science, p. 1042––1049, March 2006.
• M. Bader and C. Zenger: A Robust and Parallel Multigrid Method for Convection Diffusion Equations [BibTeX].
  In Electronic Transactions on Numerical Analysis, ETNA, Volume 15, 2003.
• M. Bader, A. Frank and C. Zenger: An Octree-Based Approach for Fast Elliptic Solvers [BibTeX].
  In M. Breuer, F. Durst and C. Zenger (ed.), High Performance Scientific and Engineering Computing, Volume 21 of Lecture Notes in Computational Science and Engineering, p. 157–166. Springer-Verlag, 2002.
• M. Bader, H.-J. Bungartz, A. Frank and R.-P. Mundani: Space Tree Structures for PDE Software [BibTeX].
  In P.M.A. Sloot (ed.), Proc. of the Int. Conf. on Computational Science, ICCS 2002, Volume 2331 of Lecture Notes in Computer Science, p. 662–671. Springer, 2002.
• M. Bader and C. Zenger: A Fast Solver for Convection Diffusion Equations Based on Nested Dissection with Incomplete Elimination [BibTeX].
  In A. Bode et.al. (ed.), Euro-Par 2000, Parallel Processing of Lecture Notes in Computer Science, p. 795–805. Springer-Verlag, 2000.

Other Publications and Preprints:

Proceedings and Special Issues (as Editor):

• M. Bader, A. Bode, H.-J. Bungartz, M. Gerndt, G. R. Joubert and F. Peters (ed.): Parallel Computing: Accelerating Computational Science and Engineering (CSE) [] [BibTeX], Volume 25 of Advances in Parallel Computing. IOS Press, April 2014.
• M. Bader, H.-J. Bungartz and T. Weinzierl (ed.): Advanced Computing [BibTeX], Volume 93 of Lecture Notes in Computational Science and Engineering. Springer-Verlag, Heidelberg, Berlin, 2013.
• M. Bader, H.-J. Bungartz, D. Grigoras, M. Mehl, R.-P. Mundani and R. Potolea (ed.): ISPDC 2012 - 11th International Symposium on Parallel and Distributed Computing [BibTeX]. IEEE Computer Society, Los Alamitos, November 2012.
• M. Bader, M. Mehl, U. Rüde and G. Wellein (ed.): Simulation Software for Supercomputers [BibTeX], Volume 2(2) of Journal of Computational Science. Elsevier, May 2011.
• M. Bader, H.-J. Bungartz and U. Rüde (ed.): Special Issue on Implementation Aspects in Scientific Computing [BibTeX], Volume 4(1) of International Journal of Computational Science and Engineering, 2008.

ACM Authorizer:

• Load Balancing and Patch-Based Parallel Adaptive Mesh Refinement for Tsunami Simulation on Heterogeneous Platforms Using Xeon Phi Coprocessors

  Chaulio R. Ferreira, Michael Bader
  PASC '17 Proceedings of the Platform for Advanced Scientific Computing Conference, 2017
• A Large-Scale Malleable Tsunami Simulation Realized on an Elastic MPI Infrastructure

  Ao Mo-Hellenbrand, Isaías Comprés, Oliver Meister, Hans-Joachim Bungartz, Michael Gerndt, Michael Bader
  CF'17 Proceedings of the Computing Frontiers Conference, 2017
• ActorX10: an actor library for X10

  Sascha Roloff, Alexander Pöppl, Tobias Schwarzer, Stefan Wildermann, Michael Bader, Michael Glaß, Frank Hannig, Jürgen Teich
  X10 2016 Proceedings of the 6th ACM SIGPLAN Workshop on X10, 2016
• SWE-X10: an actor-based and locally coordinated solver for the shallow water equations

  Alexander Pöppl, Michael Bader
  X10 2016 Proceedings of the 6th ACM SIGPLAN Workshop on X10, 2016
• Towards many-core implementation of LU decomposition using Peano Curves

  Alexander Heinecke, Michael Bader
  UCHPC-MAW '09 Proceedings of the combined workshops on UnConventional high performance computing workshop plus memory access workshop, 2009
• Parallel matrix multiplication based on space-filling curves on shared memory multicore platforms

  Alexander Heinecke, Michael Bader
  MAW '08 Proceedings of the 2008 workshop on Memory access on future processors: a solved problem?, 2008

Preprints

• M. Bader, C. Zenger :
  Cache oblivious matrix multiplication using an element ordering based on the Peano curve,
  preprint; paper accepted for publication in Linear Algebra and its Applications (Elsevier)
• M. Bader, C. Zenger :
  A Robust and Parallel Multigrid Method for Convection Diffusion Equations,
  preprint in: Virtual Proceedings of the 10th Copper Mountain Conference on Multigrid Methods;
  final paper published in ETNA, Vol. 15, 2003
• M. Bader, M. Schimper, C. Zenger :
  Hierarchical Bases for the Indefinite Helmholtz Equation,
  SFB-Bericht 342/03/99 A, 1999, (abstract, .ps.gz)

Deutschsprachige Veröffentlichungen:

• M. Bader:
  Robuste, parallele Mehrgitterverfahren für die Konvektions-Diffusions-Gleichung,
  Dissertationsschrift, Herbert Utz Verlag, München, 2001, ISBN 3-8316-0040-6, (abstract, .pdf, .ps.gz)
• M. Bader :
  Simulation einer rotierenden Gasscheibe durch numerisches Lösen der 2D-Navier-Stokes-Gleichungen,
  Diplomarbeit, Institut für Informatik, TU München, 1996, (.ps.gz)