Scientific Computing II - Summer 14

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Term
Summer 2014
Lecturer
Prof. Dr. Michael Bader
Time and Place
Tuesday 10-12, lecture room MI 02.07.023
First Lecture: Apr 8
Audience
Computational Science and Engineering, 2nd semester
others: see module description
Tutorials
Kaveh Rahnema (time and place t.b.a.)
Monday 10-12, lecture room MI 02.07.023,
First Tutorial: April 14
Exam
written exam
Semesterwochenstunden / ECTS Credits
2V + 2Ü / 5 Credits
TUMonline
Scientific Computing II



Announcements

Contents

This course provides a deeper knowledge in two important fields of scientific computing:

  • iterative solution of large sparse systems of linear equations:
    • relaxation methods
    • multigrid methods
    • steepest descent
    • conjugate gradient methods
  • molecular dynamics simulations
    • the physical model
    • the mathematical model
    • approximations and discretization
    • implementational aspects
    • parallelisation
    • examples of nanofluidic simulations

The course is conceived for students in computer science, mathematics, or some field of science or engineering who already have a certain background in the numerical treatment of (partial) differential equations.

Lecture Notes and Material

will be made available throughout the lecture ...

lecture material tutorial exercise matlab
Apr 8 Introduction, Relaxation Methods Apr 14 sheet1,solution1
Apr 15 Multigrid Methods (Part I), Animations Apr 21 - (Easter holiday)
Apr 28 (Mon) Multigrid Methods (Part II) Apr 29 (Tue) sheet2 ,Solution smoothers.m
May 05 (Mon) Multigrid Methods (Part II cont., Part III) May 06 skipped (student assembly)

Literature

  • William L. Briggs, Van Emden Henson, Steve F. McCormick. A Multigrid Tutorial. Second Edition, SIAM, 2000 (available as eBook in the TUM library)
  • Ulrich Trottenberg, Cornelis Oosterlee, Anton Schüller. Multigrid. Elsevier, 2001.
  • J.R. Shewchuk. An Introduction to the Conjugate Gradient Method Without the Agonizing Pain (download as PDF). 1994.
  • V. Eijkhout: Introduction to High-Performance Scientific Computing (textbook, available as PDF on the website)
  • M. Griebel, S. Knapek, G. Zumbusch, and A. Caglar. Numerical simulation in molecular dynamics. Springer, 2007 (available as eBook in the TUM library)
  • M. P. Allen and D. J. Tildesley. Computer Simulation of Liquids. Oxford University Press, 2003.
  • D. Frenkel and B. Smith. Understanding Molecular Simulation from Algorithms to Applications. Academic Press (2nd ed.), 2002.
  • R. J. Sadus. Molecular Simulation of Fluids; Theory, Algorithms and Object-Orientation. Elsevier, 1999.
  • D. Rapaport. The art of molecular dynamics simulation. Camebridge University Press, 1995.

Further Material

Annotated slides for the lecture in summer 2010 /(given by Dr. Tobias Weinzierl) are available from the TeleTeachingTool Lecture Archive

Matlab (together with installation instructions) is available from https://matlab.rbg.tum.de/